Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000432s00027005.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57810.3	5.00E-77	Cysteine proteinases superfamily protein
NR	XP_004497941.1	0	PREDICTED: OTU domain-containing protein At3g57810-like [Cicer arietinum]
Swissprot	tr\|Q8LBZ4\|OTU_ARATH	1.00E-93	OTU domain-containing protein At3g57810
trEMBL	tr\|A0A072VIC0\|A0A072VIC0_MEDTR	0	OTU-like cysteine protease {ECO:0000313\|EMBL:KEH41567.1}

Sequence

Transcript Sequence

>Glyur000432s00027005.2
GAACAACACAGGAGTGGCTTCTCTGAAACATCATTTGAAAATTCACCCCCTTTCTTGCCTAACCCGTTTATCTTCAAACCATTATTATTCTTTTCTTCAACTCCAGAATATAGCTTTTCCCTTGAACAATACTCATTCTGCTCCTCGTGTTTCATCCTCTCTGGGTTGTTTTTTAGAACCCCCAAACAAACGCAGTCACCCACTCTTCACGTTTCACTTCCTTCAACAGGTGATGTAAACATGAGTGTTTTCTTTCCTGTTAGTCAATCTTCAATAAATGCTGTTGTCTTGAAAGGTCGTACTCAGCTGCTGCTGAGTAGTAACATCTGTAGTCTTGGGTCCCGAGGCATATCCAGTTCATTTTCTTCCAGTTGTTTCCCTGGGCAGTTGGAGACAAATCATGTTGGTCTATTTATGGGCCAAACAATCAGAGGAGGTTACCTTGGATCATGCTACTCCAAGCAAAGGGGCACTGCTCGATTCTTCAGTTCTGTAGTGCCTCGGAAGAGGCATAATGAAATTTCATTGGCATGCCAAAGAATACCNGGAGATGGAAGATGCTTATTCCGCTCTGTTGCTCATGGCGCTTGTTTGAGGTCCGGAAAACCCCCACCTAGTGGAAGCTTTCAGAGAGAACTGGCAGATGATTTAAGGGCCAGAGTTGCTGACGAGTTTATCAAAAGAAGGGAAGAGACAGAATGGTTTATTGAAGGTGATTTTGATACATATGTTTCACAAATAAGGAAGCCTCATGTGTGGGGAGGTGAGCCTGAATTGTTCATTGCCTCACATGTTTTGCAGATGCCAATCACTGTGTACATGTATGATCAAGATGCTGGAGGCTTGATATCAATTGCTGAGTATGGCCAAGAATACGGCAAGGAAAATCCAATTAGAGTTCTCTACCATGGGTTTGGTCATTATGATGCACTAGAGATCCCTAGAAGAAAGGGTCCTAAGCCACGACTCTAGCATTTCACATTTCAAATGTGGAAGAGATTAGATTAAAAGCCTGTATTAATTTCTTTTATTAAATGCTAACAACACACTTTCTGGCATACTCTTTCTAACACTCTCTCTATGATTGATTGAAATTCATGTGGGTCATACTATTTTGTGAATGGATTNTACCAAATAGAGTGTGAGACTCACATNATTTAATGCAANCCACGTGAATTCTATCCAATCATAGATAGTGTGCAATTGTGTTGGAAAAAGTGTATTAGAGAGTGTATTGCTAGNGCTCACACTTATAATGTCATCGTTGTCACGTATAGGGTCCAGTTGCAAGACACCCGAAATGCAACCTTATGTCTTTCAGGTCTTGGAGGACATACATAATATATGGTCCAAGGGAAGGGACAATGAATAATGATATTCATTTTAATGACTTTATTTTCATGCCATACACGTGGCTAATTATGTTGTATTTTTTTTTTGTTGGTCTGAATAAAAAAGAACCTTTAACTTGGGGTGGACCTTAAAGGTTCAAACCATCCACTAACTTATGTAAAGCCCTTTCGGTTAAAGGTAAAAATGGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00432	21258	26573	+

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000432s00027005.2	PF02338.14	OTU	102	228	1.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.417
SRR1783600	control	7.558
SRR1783602	moderate drought stress	10.391
SRR1811619	moderate drought stress	10.569

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.081
DRR006520	Root Summer glycyrrhizin high producing strain	8.196
DRR006521	Root Winter glycyrrhizin high producing strain	6.538
DRR006522	Root Winter glycyrrhizin high producing strain	6.273
DRR006523	Root Summer glycyrrhizin low producing strain	5.612
DRR006524	Root Summer glycyrrhizin low producing strain	5.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.416
SRR2868004	Drought Stress(Tissue:root)	10.414
SRR2967015	Control (Tissue:root)	9.818

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	16.754
SRR9715740	Leave	22.412
SRR9715741	Leave	21.663
SRR9715739	Root	8.864
SRR9715742	Root	11.210
SRR9715743	Root	8.926

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.091
SRR8749028	MeJA induced 9h	8.283
SRR8749029	MeJA induced 9h	12.454
SRR8749030	Uninduced	8.995
SRR8749031	Uninduced	6.557
SRR8749032	Uninduced	10.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.231
SRR8400027	Control-Root	11.312