Gene detail information of Glyur000433s00026970.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02820.2 | 4.00E-134 | myb domain protein 88 |
| NR | XP_003519765.1 | 0 | PREDICTED: pre-mRNA-splicing factor CEF1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9S7L2|MYB98_ARATH | 4.00E-20 | Transcription factor MYB98 |
| trEMBL | tr|I1JBN1|I1JBN1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G02310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00433 | 99972 | 106489 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000433s00026970.1 | PF13921.1 | Myb_DNA-bind_6 | 57 | 117 | 1.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.435 |
| SRR1783600 | control | 11.384 |
| SRR1783602 | moderate drought stress | 15.638 |
| SRR1811619 | moderate drought stress | 15.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.247 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.429 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.784 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.493 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.303 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.036 |
| SRR2967015 | Control (Tissue:root) | 17.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.161 |
| SRR9715740 | Leave | 10.053 |
| SRR9715741 | Leave | 9.015 |
| SRR9715739 | Root | 0.688 |
| SRR9715742 | Root | 3.738 |
| SRR9715743 | Root | 2.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.761 |
| SRR8749028 | MeJA induced 9h | 9.162 |
| SRR8749029 | MeJA induced 9h | 2.787 |
| SRR8749030 | Uninduced | 11.497 |
| SRR8749031 | Uninduced | 5.849 |
| SRR8749032 | Uninduced | 1.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.660 |
| SRR8400027 | Control-Root | 14.809 |