Gene detail information of Glyur000434s00017215.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13710.28.00E-93sterol methyltransferase 1
NRKCW66085.11.29E-156hypothetical protein EUGRSUZ_G03364 [Eucalyptus grandis]
COGYP_001277818.13.00E-22type 11 methyltransferase [Roseiflexus sp. RS-1]
Swissprottr|Q6ZIX2|SMT1_ORYSJ9.00E-118Cycloartenol-C-24-methyltransferase 1
trEMBLtr|A0A059BK57|A0A059BK57_EUCGR5.00E-157Uncharacterized protein {ECO:0000313|EMBL:KCW66085.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004344158046794+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00559E2.1.1.41, SMT1, ERG6 EC:2.1.1.41 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006694  steroid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000434s00017215.1PF08241.7Methyltransf_11991777.30E-13
Glyur000434s00017215.1PF08498.5Sterol_MT_C2042481.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control103.548
SRR1783600control104.116
SRR1783602moderate drought stress41.999
SRR1811619moderate drought stress41.434

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.701
DRR006520Root Summer glycyrrhizin high producing strain44.969
DRR006521Root Winter glycyrrhizin high producing strain1.227
DRR006522Root Winter glycyrrhizin high producing strain1.116
DRR006523Root Summer glycyrrhizin low producing strain29.364
DRR006524Root Summer glycyrrhizin low producing strain28.099
DRR006525Leaf Summer glycyrrhizin high producing strain2.383
DRR006526Leaf Summer glycyrrhizin high producing strain2.427

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)103.393
SRR2868004Drought Stress(Tissue:root)67.812
SRR2967015Control (Tissue:root)80.084

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.424
SRR9715740Leave5.349
SRR9715741Leave13.800
SRR9715739Root38.628
SRR9715742Root70.918
SRR9715743Root69.495

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.080
SRR8749028MeJA induced 9h20.128
SRR8749029MeJA induced 9h10.930
SRR8749030Uninduced3.661
SRR8749031Uninduced0.958
SRR8749032Uninduced2.290

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root112.885
SRR8400027Control-Root135.866

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved