Gene detail information of Glyur000434s00017221.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23890.20topoisomerase II
NRXP_004499912.10PREDICTED: DNA topoisomerase 2-like [Cicer arietinum]
COGYP_003474154.12.00E-42DNA gyrase subunit beta [Thermocrinis albus DSM 14484]
Swissprottr|O24308|TOP2_PEA0DNA topoisomerase 2
trEMBLtr|I1MJQ7|I1MJQ7_SOYBN0DNA topoisomerase 2 {ECO:0000256|RuleBase:RU000381}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004346509272046+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03164TOP2 EC:5.99.1.3 Platinum drug resistance map01524


Gene Ontology

biological_process

GO:0006259  DNA metabolic process

GO:0006265  DNA topological change


molecular_function

GO:0003677  DNA binding

GO:0003918  DNA topoisomerase type II (ATP-hydrolyzing) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000434s00017221.1PF02518.21HATPase_c692144.50E-06
Glyur000434s00017221.1PF00204.20DNA_gyraseB2594162.40E-34
Glyur000434s00017221.1PF01751.17Toprim4475613.50E-11
Glyur000434s00017221.1PF00521.15DNA_topoisoIV69111531.20E-122


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.471
SRR1783600control6.585
SRR1783602moderate drought stress4.283
SRR1811619moderate drought stress4.205

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.883
DRR006520Root Summer glycyrrhizin high producing strain8.858
DRR006521Root Winter glycyrrhizin high producing strain0.300
DRR006522Root Winter glycyrrhizin high producing strain0.317
DRR006523Root Summer glycyrrhizin low producing strain2.376
DRR006524Root Summer glycyrrhizin low producing strain2.395
DRR006525Leaf Summer glycyrrhizin high producing strain1.198
DRR006526Leaf Summer glycyrrhizin high producing strain1.267

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.849
SRR2868004Drought Stress(Tissue:root)17.829
SRR2967015Control (Tissue:root)21.427

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.984
SRR9715740Leave0.424
SRR9715741Leave1.218
SRR9715739Root0.580
SRR9715742Root3.536
SRR9715743Root3.104

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.397
SRR8749028MeJA induced 9h36.513
SRR8749029MeJA induced 9h20.224
SRR8749030Uninduced1.373
SRR8749031Uninduced0.970
SRR8749032Uninduced3.331

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.689
SRR8400027Control-Root16.583

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved