Gene detail information of Glyur000434s00017234.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05170.10Cellulose synthase family protein
NRXP_007148880.10hypothetical protein PHAVU_005G022100g [Phaseolus vulgaris]
COGNP_487797.16.00E-21cellulose synthase catalytic subunit [Nostoc sp. PCC 7120]
Swissprottr|Q941L0|CESA3_ARATH0Cellulose synthase A catalytic subunit 3 [UDP-forming]
trEMBLtr|V7BSE0|V7BSE0_PHAVU0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00434128246135549+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000434s00017234.1PF14569.1zf-UDP11842.00E-32
Glyur000434s00017234.1PF03552.9Cellulose_synt34110620


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.678
SRR1783600control54.855
SRR1783602moderate drought stress30.385
SRR1811619moderate drought stress30.314

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.420
DRR006520Root Summer glycyrrhizin high producing strain26.085
DRR006521Root Winter glycyrrhizin high producing strain35.234
DRR006522Root Winter glycyrrhizin high producing strain34.006
DRR006523Root Summer glycyrrhizin low producing strain15.035
DRR006524Root Summer glycyrrhizin low producing strain14.872
DRR006525Leaf Summer glycyrrhizin high producing strain16.645
DRR006526Leaf Summer glycyrrhizin high producing strain16.660

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)170.053
SRR2868004Drought Stress(Tissue:root)122.524
SRR2967015Control (Tissue:root)103.407

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.143
SRR9715740Leave18.933
SRR9715741Leave24.497
SRR9715739Root36.713
SRR9715742Root75.477
SRR9715743Root66.684

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.187
SRR8749028MeJA induced 9h69.288
SRR8749029MeJA induced 9h35.456
SRR8749030Uninduced45.186
SRR8749031Uninduced9.637
SRR8749032Uninduced11.921

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root88.811
SRR8400027Control-Root106.765

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved