Gene detail information of Glyur000434s00017235.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41900.10CCCH-type zinc finger protein with ARM repeat domain
NRXP_004499884.10PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum]
Swissprottr|P93755|C3H30_ARATH0Zinc finger CCCH domain-containing protein 30
trEMBLtr|I1MJP7|I1MJP7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G43030.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00434144655146817+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000434s00017235.1PF12796.2Ank_2871741.50E-12
Glyur000434s00017235.1PF00642.19zf-CCCH3013210.00013


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.810
SRR1783600control30.372
SRR1783602moderate drought stress30.269
SRR1811619moderate drought stress30.222

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.331
DRR006520Root Summer glycyrrhizin high producing strain21.210
DRR006521Root Winter glycyrrhizin high producing strain14.486
DRR006522Root Winter glycyrrhizin high producing strain13.950
DRR006523Root Summer glycyrrhizin low producing strain18.685
DRR006524Root Summer glycyrrhizin low producing strain19.411
DRR006525Leaf Summer glycyrrhizin high producing strain25.533
DRR006526Leaf Summer glycyrrhizin high producing strain25.752

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.371
SRR2868004Drought Stress(Tissue:root)61.002
SRR2967015Control (Tissue:root)43.815

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.529
SRR9715740Leave37.002
SRR9715741Leave26.158
SRR9715739Root30.434
SRR9715742Root36.864
SRR9715743Root33.040

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.202
SRR8749028MeJA induced 9h26.058
SRR8749029MeJA induced 9h12.609
SRR8749030Uninduced12.606
SRR8749031Uninduced5.839
SRR8749032Uninduced7.289

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root57.377
SRR8400027Control-Root43.788

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved