Gene detail information of Glyur000435s00027250.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.17.00E-78chitinase A
NRXP_004490140.10PREDICTED: acidic endochitinase-like [Cicer arietinum]
COGYP_006916186.15.00E-12endo-chitinase chi18C [Simiduia agarivorans SA1 = DSM 21679]
Swissprottr|P29024|CHIA_PHAAN7.00E-130Acidic endochitinase (Precursor)
trEMBLtr|G7JXV4|G7JXV4_MEDTR0Chitinase {ECO:0000313|EMBL:AES96955.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004358118782071+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000435s00027250.1PF00704.23Glyco_hydro_18272442.60E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.390
SRR1783600control2.477
SRR1783602moderate drought stress1.126
SRR1811619moderate drought stress1.111

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain93.942
DRR006520Root Summer glycyrrhizin high producing strain93.532
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain126.348
DRR006524Root Summer glycyrrhizin low producing strain125.598
DRR006525Leaf Summer glycyrrhizin high producing strain0.625
DRR006526Leaf Summer glycyrrhizin high producing strain0.523

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.695
SRR2868004Drought Stress(Tissue:root)47.168
SRR2967015Control (Tissue:root)16.790

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.071
SRR9715740Leave0.066
SRR9715741Leave0.148
SRR9715739Root190.934
SRR9715742Root143.108
SRR9715743Root131.169

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.036
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.795
SRR8400027Control-Root20.597

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved