Gene detail

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Gene detail information of Glyur000436s00018444.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50570.2	3.00E-46	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
NR	XP_006584701.1	1.42E-166	PREDICTED: squamosa promoter-binding-like protein 13B-like isoform X2 [Glycine max]
Swissprot	tr\|P0DI11\|SP13B_ARATH	5.00E-59	Squamosa promoter-binding-like protein 13B
trEMBL	tr\|K7L4C4\|K7L4C4_SOYBN	5.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G01450.2}

Sequence

Transcript Sequence

>Glyur000436s00018444.1
ATGGACTGGAATTTGAAAGCACCTACATGGGATTTGACTGAAGTAGATCAGGCAAACTTACCCAGCATAGAAGCAATGAATAATAGCTCAAACAGTTTTGGAATTTATAGAACAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGCCAAGTGGGGAATTCTTGCACAGAATCAGTGCTTATCACCAAGTCCAAAGATGCTGCTGGTGGTGGTGGTGGANTTTGTTCCAAGATGATGACATCATCAACATCATCTTCAGGGTCATCTAAGAGAGCTAGAGCCATTAACAATAGGACTCAGACAGTGTCATGCCTTGTAGATGGGTGCCAAGCTGATCTTAGCAACTGTAGGGACTATCATAGGCGCCATAAGGTCTGTGAACTCCACTCCAAGACCGCACAGGTCACAATTGGTGGCCAGAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAGAGGAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGGAAGCCACAGCCACAGCTAGAACCTCTCACGCGATCTGGTAGCTTTTTGTCCAATTACCAAGATGCTAGGCTGATCCATAGCCACAACCAACACCACCAACAAGTCCATCTGGTGGATAGACAAGACCTTTTCCTTGGTTCTTCTCCAACCAGCAGCTATAAGGAAGGGAAGCAACTGGCATTCATGCATCAACAACAAGGTGACCAGCCCACAGTCCAAAGCCCACATCTCCCAGGCCCAGCTGCATCTTCAATGGGCCACACGTTTCGCAGGAGCAGCCCATTTTCAGAAAGCAGCAGCAGTAACGGGCTGAGATGCAAAATGTTCTGTGATACCCTNACAAGTTCAGTCCATGACTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCACCACCACAGTCACAGACGCACAATCACATGGTAAACCCTCACTCGTCGTCCTTTATGCAACCCTTGGGCCTGAGCCTGTTGCATGATCACAGCTTAGGCCCACTGGACTCNGTTTTGGGCCCCAATGGGAGTGATCATTGTTCCTCAATGTATAACATGGGTTCTAGTGGATCCCAGGGGAACGAAGCCCCTCCAATATTTCCCTTTCAATGGGAATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00436	38848	41735	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000436s00018444.1	PF03110.9	SBP	105	181	7.50E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.240
SRR1783600	control	0.322
SRR1783602	moderate drought stress	0.386
SRR1811619	moderate drought stress	0.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.454
DRR006520	Root Summer glycyrrhizin high producing strain	0.745
DRR006521	Root Winter glycyrrhizin high producing strain	0.097
DRR006522	Root Winter glycyrrhizin high producing strain	0.094
DRR006523	Root Summer glycyrrhizin low producing strain	0.591
DRR006524	Root Summer glycyrrhizin low producing strain	0.461
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.389
SRR2868004	Drought Stress(Tissue:root)	0.443
SRR2967015	Control (Tissue:root)	1.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.756
SRR9715740	Leave	0.336
SRR9715741	Leave	0.472
SRR9715739	Root	0.077
SRR9715742	Root	0.852
SRR9715743	Root	0.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.006
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.239
SRR8749032	Uninduced	0.097

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.270
SRR8400027	Control-Root	0.998