Gene detail information of Glyur000436s00018451.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29840.1 | 8.00E-12 | RING/U-box superfamily protein |
| NR | XP_006605608.1 | 3.22E-35 | PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Glycine max] |
| Swissprot | tr|P0CH30|RING1_GOSHI | 3.00E-11 | E3 ubiquitin-protein ligase RING1 |
| trEMBL | tr|K7K856|K7K856_SOYBN | 2.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G15410.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 69838 | 70758 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018451.1 | PF12678.2 | zf-rbx1 | 182 | 242 | 8.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.007 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.820 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.655 |
| SRR2967015 | Control (Tissue:root) | 0.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.721 |
| SRR8749028 | MeJA induced 9h | 3.058 |
| SRR8749029 | MeJA induced 9h | 1.421 |
| SRR8749030 | Uninduced | 1.098 |
| SRR8749031 | Uninduced | 20.297 |
| SRR8749032 | Uninduced | 12.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.404 |
| SRR8400027 | Control-Root | 0.379 |