Gene detail information of Glyur000436s00018466.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39900.1 | 2.00E-59 | GATA type zinc finger transcription factor family protein |
| NR | KEH21040.1 | 7.25E-109 | GATA type zinc finger transcription factor family protein [Medicago truncatula] |
| Swissprot | tr|Q500W4|PLI2C_ARATH | 7.00E-78 | LIM domain-containing protein PLIM2c {ECO:0000305} |
| trEMBL | tr|A0A072U5A9|A0A072U5A9_MEDTR | 3.00E-109 | GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:KEH21040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 136605 | 138029 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018466.1 | PF00412.17 | LIM | 10 | 63 | 3.30E-11 |
| Glyur000436s00018466.1 | PF00412.17 | LIM | 88 | 143 | 4.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.005 |
| SRR1783602 | moderate drought stress | 0.033 |
| SRR1811619 | moderate drought stress | 0.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.081 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.043 |
| SRR2967015 | Control (Tissue:root) | 0.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.368 |
| SRR9715740 | Leave | 0.453 |
| SRR9715741 | Leave | 0.132 |
| SRR9715739 | Root | 0.040 |
| SRR9715742 | Root | 0.005 |
| SRR9715743 | Root | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.012 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.052 |
| SRR8749030 | Uninduced | 0.041 |
| SRR8749031 | Uninduced | 0.126 |
| SRR8749032 | Uninduced | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.089 |
| SRR8400027 | Control-Root | 0.143 |