Gene detail information of Glyur000437s00025653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20060.3 | 6.00E-29 | alpha/beta-Hydrolases superfamily protein |
| NR | KEH28718.1 | 4.44E-48 | acyl thioesterase-like protein [Medicago truncatula] |
| COG | YP_007541785.1 | 1.00E-07 | carboxylesterase [Glaciecola psychrophila 170] |
| trEMBL | tr|A0A072UHW3|A0A072UHW3_MEDTR | 2.00E-48 | Acyl thioesterase-like protein {ECO:0000313|EMBL:KEH28718.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 60083 | 64655 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06130 | LYPLA2 | EC:3.1.1.5 | Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000437s00025653.1 | PF02230.11 | Abhydrolase_2 | 29 | 81 | 7.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.339 |
| SRR1783600 | control | 2.162 |
| SRR1783602 | moderate drought stress | 1.498 |
| SRR1811619 | moderate drought stress | 1.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.220 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.240 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.839 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.125 |
| SRR2967015 | Control (Tissue:root) | 2.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.010 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.017 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.213 |
| SRR9715743 | Root | 0.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.240 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.003 |
| SRR8749030 | Uninduced | 0.022 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.907 |
| SRR8400027 | Control-Root | 5.537 |