Gene detail information of Glyur000437s00025661.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43090.13.00E-80Aconitase/3-isopropylmalate dehydratase protein
NRXP_007135733.18.01E-130hypothetical protein PHAVU_010G153800g [Phaseolus vulgaris]
COGYP_007129044.11.00E-823-isopropylmalate dehydratase, small subunit [Gloeocapsa sp. PCC 7428]
Swissprottr|Q9ZW85|LEUD3_ARATH1.00E-1013-isopropylmalate dehydratase small subunit 3 (Precursor)
trEMBLtr|V7APZ2|V7APZ2_PHAVU3.00E-130Uncharacterized protein {ECO:0000313|EMBL:ESW07727.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0043799522108906-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01704leuD EC:4.2.1.33 4.2.1.35 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016836  hydro-lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000437s00025661.1PF00694.14Aconitase_C1341811.50E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control78.208
SRR1783600control79.436
SRR1783602moderate drought stress85.407
SRR1811619moderate drought stress85.299

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.986
DRR006520Root Summer glycyrrhizin high producing strain62.831
DRR006521Root Winter glycyrrhizin high producing strain48.898
DRR006522Root Winter glycyrrhizin high producing strain48.071
DRR006523Root Summer glycyrrhizin low producing strain64.656
DRR006524Root Summer glycyrrhizin low producing strain63.801
DRR006525Leaf Summer glycyrrhizin high producing strain63.130
DRR006526Leaf Summer glycyrrhizin high producing strain61.721

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.437
SRR2868004Drought Stress(Tissue:root)52.498
SRR2967015Control (Tissue:root)44.510

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave103.860
SRR9715740Leave66.932
SRR9715741Leave110.615
SRR9715739Root116.127
SRR9715742Root116.877
SRR9715743Root114.379

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.094
SRR8749028MeJA induced 9h32.061
SRR8749029MeJA induced 9h22.294
SRR8749030Uninduced19.879
SRR8749031Uninduced10.192
SRR8749032Uninduced19.584

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.327
SRR8400027Control-Root76.146

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved