Gene detail information of Glyur000437s00025665.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25290.1 | 4.00E-04 | F-box family protein with a domain of unknown function (DUF295) |
| NR | KHN47777.1 | 0 | F-box only protein 6 [Glycine soja] |
| Swissprot | tr|Q3EB08|FBK69_ARATH | 2.00E-09 | F-box/kelch-repeat protein At3g24760 |
| trEMBL | tr|A0A072UHV0|A0A072UHV0_MEDTR | 0 | Unusual floral organs-like protein {ECO:0000313|EMBL:KEH28703.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 118003 | 119169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000437s00025665.1 | PF00646.28 | F-box | 2 | 41 | 1.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.399 |
| SRR1783600 | control | 1.340 |
| SRR1783602 | moderate drought stress | 11.245 |
| SRR1811619 | moderate drought stress | 11.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.756 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.762 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.731 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.553 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.509 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.281 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.582 |
| SRR2967015 | Control (Tissue:root) | 12.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.977 |
| SRR9715740 | Leave | 2.696 |
| SRR9715741 | Leave | 1.604 |
| SRR9715739 | Root | 3.191 |
| SRR9715742 | Root | 3.679 |
| SRR9715743 | Root | 3.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.941 |
| SRR8749028 | MeJA induced 9h | 9.814 |
| SRR8749029 | MeJA induced 9h | 1.656 |
| SRR8749030 | Uninduced | 1.038 |
| SRR8749031 | Uninduced | 2.597 |
| SRR8749032 | Uninduced | 4.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.424 |
| SRR8400027 | Control-Root | 3.432 |