Gene detail

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Gene detail information of Glyur000439s00018999.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79220.1	1.00E-84	Mitochondrial transcription termination factor family protein
NR	XP_004510229.1	0	PREDICTED: uncharacterized protein LOC101512780 [Cicer arietinum]
trEMBL	tr\|G7LF49\|G7LF49_MEDTR	0	Transcription termination factor family protein {ECO:0000313\|EMBL:AET01407.1}

Sequence

Transcript Sequence

>Glyur000439s00018999.1
ATGCTTCGGTTTCTCTCAAATGGGTCAAATCCTTTTCACCCTTTTACACTCGCTCCGGTCACAAAACAAGCTTTGCGAGTGTTCACTTCTGCCACCTGTTCGACGAATGGCCTAGCCCAAGCCAAGGACGAAGTGCAAGAACCTAGAGACAAATGGAAGGATGCCACTGAAGTTTTGAGTAAATGGGGTTGTAGTGACGATGATTTGATGCTAATATTTTCCCGTTGCCCCTCATTGCGCAATGCTGACCCTTCCAAGGTTCAATCTAAGCTCTTCCTGCTGAGTGACTTGGGCTTAGGGGCATCTGAACTTGTTAAGATTATCAAATGCAGGCCTCGGTTTTTCGGTTCACGGATTAACCATTGCTTCGACGAAAGGCTTGCCTCCCTAATGTCATTGTTTGAGTCAAAGGAGGTGCTTCACAAGGCCATTGTGAGAAACCCTTCTCTATTGCTATGTGNCAGTTATCGCTGTGATGTCAAAGGTATTGTTGCACTCTATGAAGGGTTAGGTGTGAAGAAAAAGGACTTGGTTCAGATGCTGCTTTTGCGGCCGACGATCGTTTCGAGGACTACCTTTGATGATGAGAAGCTTGAATATATAAGTAGGATAGGGCTTTCCAAGGACTCAAAGATGTACAAATATGTGGTGACGCTAATAGGCATCTCTCGCGNGGAAACGATTCGGGAAAAAGTATCGAATTTCATGAAGTTCGGTTTTTCAGATGATGAGGTATTTGGTCTCTTTGGGAGGTCTCCTAATGTTTTGACACTGTCAACTGATAAGGTTCAGAGGAACATGACTTTCATTTTAGGCACAATTAAGCTTGAGGCCAGTATAATCCTGAAGTACCCAGATCTCTTGTATGCTAATGTGGATACCGTTTTGAAGCCAAGGGTGCTTCTAGCAATGAAGATAGAAGATATGGATTCTAGGTTGCAAATACCTACACTAAGGACACTGAGGATGTCAGAGGAGAGATTTTTGAAATTGTTTGTCCAATGCCATGACAAGGAAATTGCTGATGAGTTGATGGAATTCTATAGGAGGACAAAAGAGGTGAAGAGACTGGCAGAGTCATCCAAGAATTGCGTTACTAGAGGNTTCCCTTTCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	20383	21498	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005739 mitochondrion molecular_function GO:0003690 double-stranded DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00018999.1	PF02536.9	mTERF	54	330	1.90E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.771
SRR1783600	control	0.770
SRR1783602	moderate drought stress	0.740
SRR1811619	moderate drought stress	0.764

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.212
DRR006520	Root Summer glycyrrhizin high producing strain	3.091
DRR006521	Root Winter glycyrrhizin high producing strain	2.090
DRR006522	Root Winter glycyrrhizin high producing strain	1.776
DRR006523	Root Summer glycyrrhizin low producing strain	2.276
DRR006524	Root Summer glycyrrhizin low producing strain	4.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.024

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.807
SRR2868004	Drought Stress(Tissue:root)	1.323
SRR2967015	Control (Tissue:root)	1.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.338
SRR9715740	Leave	2.216
SRR9715741	Leave	1.464
SRR9715739	Root	1.081
SRR9715742	Root	3.140
SRR9715743	Root	1.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.573
SRR8749028	MeJA induced 9h	1.479
SRR8749029	MeJA induced 9h	1.164
SRR8749030	Uninduced	0.639
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.555
SRR8400027	Control-Root	2.792