Gene detail information of Glyur000439s00019009.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07340.1 | 3.00E-84 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007134164.1 | 0 | hypothetical protein PHAVU_010G024800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SRT2|BH062_ARATH | 1.00E-115 | Transcription factor bHLH62 |
| trEMBL | tr|V7ANK1|V7ANK1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW06158.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00439 | 84837 | 88049 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000439s00019009.1 | PF00010.21 | HLH | 343 | 390 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.726 |
| SRR1783600 | control | 38.318 |
| SRR1783602 | moderate drought stress | 24.154 |
| SRR1811619 | moderate drought stress | 24.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.036 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.083 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.355 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.354 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 64.096 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.503 |
| SRR2967015 | Control (Tissue:root) | 42.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.672 |
| SRR9715740 | Leave | 2.935 |
| SRR9715741 | Leave | 2.447 |
| SRR9715739 | Root | 9.247 |
| SRR9715742 | Root | 31.385 |
| SRR9715743 | Root | 25.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.195 |
| SRR8749028 | MeJA induced 9h | 47.611 |
| SRR8749029 | MeJA induced 9h | 49.825 |
| SRR8749030 | Uninduced | 115.233 |
| SRR8749031 | Uninduced | 49.391 |
| SRR8749032 | Uninduced | 20.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.268 |
| SRR8400027 | Control-Root | 77.706 |