Gene detail information of Glyur000439s00019012.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07330.1 | 0 | Cellulose-synthase-like C6 |
| NR | XP_004510233.1 | 0 | PREDICTED: probable xyloglucan glycosyltransferase 6-like [Cicer arietinum] |
| COG | YP_002602659.1 | 2.00E-63 | putative glucosyltransferase family protein [Desulfobacterium autotrophicum HRM2] |
| Swissprot | tr|Q9SRT3|CSLC6_ARATH | 0 | Probable xyloglucan glycosyltransferase 6 |
| trEMBL | tr|G7LF59|G7LF59_MEDTR | 0 | Xyloglucan glycosyltransferase {ECO:0000313|EMBL:AET01417.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00439 | 95600 | 100958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000439s00019012.1 | PF13641.1 | Glyco_tranf_2_3 | 227 | 458 | 1.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.077 |
| SRR1783600 | control | 19.238 |
| SRR1783602 | moderate drought stress | 15.814 |
| SRR1811619 | moderate drought stress | 15.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.674 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.341 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.939 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.117 |
| SRR2967015 | Control (Tissue:root) | 28.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.288 |
| SRR9715740 | Leave | 11.209 |
| SRR9715741 | Leave | 13.158 |
| SRR9715739 | Root | 7.197 |
| SRR9715742 | Root | 17.776 |
| SRR9715743 | Root | 15.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.722 |
| SRR8749028 | MeJA induced 9h | 13.516 |
| SRR8749029 | MeJA induced 9h | 7.264 |
| SRR8749030 | Uninduced | 5.533 |
| SRR8749031 | Uninduced | 4.820 |
| SRR8749032 | Uninduced | 3.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.510 |
| SRR8400027 | Control-Root | 24.962 |