Gene detail information of Glyur000440s00021863.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20420.10chromatin remodeling 42
NRXP_006595851.10PREDICTED: SNF2 domain-containing protein CLASSY 2-like isoform X1 [Glycine max]
COGYP_001655250.12.00E-18SNF2 helicase-like protein [Microcystis aeruginosa NIES-843]
Swissprottr|F4K493|CLSY2_ARATH0SNF2 domain-containing protein CLASSY 2
trEMBLtr|I1M7Q5|I1M7Q5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06090.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004407242079323-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10875RAD54L, RAD54 EC:3.6.4.- Homologous recombination map03440


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000440s00021863.1PF00176.18SNF2_N73110007.00E-21
Glyur000440s00021863.1PF00271.26Helicase_C115312291.40E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.341
SRR1783600control10.459
SRR1783602moderate drought stress7.829
SRR1811619moderate drought stress7.875

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.956
DRR006520Root Summer glycyrrhizin high producing strain6.752
DRR006521Root Winter glycyrrhizin high producing strain0.751
DRR006522Root Winter glycyrrhizin high producing strain0.732
DRR006523Root Summer glycyrrhizin low producing strain6.843
DRR006524Root Summer glycyrrhizin low producing strain6.912
DRR006525Leaf Summer glycyrrhizin high producing strain3.937
DRR006526Leaf Summer glycyrrhizin high producing strain3.826

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.673
SRR2868004Drought Stress(Tissue:root)10.637
SRR2967015Control (Tissue:root)12.017

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.728
SRR9715740Leave3.292
SRR9715741Leave3.585
SRR9715739Root1.260
SRR9715742Root6.859
SRR9715743Root5.513

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.410
SRR8749028MeJA induced 9h5.022
SRR8749029MeJA induced 9h2.475
SRR8749030Uninduced0.642
SRR8749031Uninduced0.617
SRR8749032Uninduced0.612

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.566
SRR8400027Control-Root18.576

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved