Gene detail information of Glyur000440s00021875.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G34930.18.00E-85arogenate dehydrogenase
NRXP_004490996.16.87E-163PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Cicer arietinum]
COGYP_005063728.11.00E-36prephenate dehydrogenase [Sphaerochaeta pleomorpha str. Grapes]
Swissprottr|Q944B6|TYRA1_ARATH3.00E-101Arogenate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|I1M7P5|I1M7P5_SOYBN3.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G05990.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00440140171142888-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15227TYRAAT EC:1.3.1.78 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0006571  tyrosine biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004665  prephenate dehydrogenase (NADP+) activity

GO:0008977  prephenate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000440s00021875.1PF02153.12PDH692651.60E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.292
SRR1783600control0.291
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.334
DRR006522Root Winter glycyrrhizin high producing strain0.326
DRR006523Root Summer glycyrrhizin low producing strain0.220
DRR006524Root Summer glycyrrhizin low producing strain0.221
DRR006525Leaf Summer glycyrrhizin high producing strain3.627
DRR006526Leaf Summer glycyrrhizin high producing strain3.684

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.174
SRR2868004Drought Stress(Tissue:root)0.224
SRR2967015Control (Tissue:root)0.561

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.509
SRR9715740Leave22.290
SRR9715741Leave12.002
SRR9715739Root0.148
SRR9715742Root0.274
SRR9715743Root0.240

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.928
SRR8749028MeJA induced 9h15.862
SRR8749029MeJA induced 9h9.864
SRR8749030Uninduced0.794
SRR8749031Uninduced0.633
SRR8749032Uninduced1.438

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.480
SRR8400027Control-Root0.832

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved