Gene detail information of Glyur000443s00016842.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06770.13.00E-40KH domain-containing protein / zinc finger (CCCH type) family protein
NRXP_004497409.14.79E-168PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum]
Swissprottr|Q7F8R0|C3H14_ORYSJ5.00E-96Zinc finger CCCH domain-containing protein 14
trEMBLtr|C6TA41|C6TA41_SOYBN5.00E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G39160.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004431796923421+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000443s00016842.1PF14608.1zf-CCCH_230410.09
Glyur000443s00016842.1PF00642.19zf-CCCH851104.10E-07
Glyur000443s00016842.1PF00013.24KH_11612231.50E-12
Glyur000443s00016842.1PF00642.19zf-CCCH2522762.60E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.491
SRR1783600control18.782
SRR1783602moderate drought stress25.676
SRR1811619moderate drought stress25.186

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.086
DRR006520Root Summer glycyrrhizin high producing strain33.957
DRR006521Root Winter glycyrrhizin high producing strain69.324
DRR006522Root Winter glycyrrhizin high producing strain65.506
DRR006523Root Summer glycyrrhizin low producing strain37.065
DRR006524Root Summer glycyrrhizin low producing strain37.310
DRR006525Leaf Summer glycyrrhizin high producing strain20.641
DRR006526Leaf Summer glycyrrhizin high producing strain20.251

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.198
SRR2868004Drought Stress(Tissue:root)43.013
SRR2967015Control (Tissue:root)53.436

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.239
SRR9715740Leave43.011
SRR9715741Leave45.426
SRR9715739Root29.926
SRR9715742Root35.649
SRR9715743Root27.580

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.894
SRR8749028MeJA induced 9h34.549
SRR8749029MeJA induced 9h38.706
SRR8749030Uninduced41.096
SRR8749031Uninduced23.553
SRR8749032Uninduced37.705

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.421
SRR8400027Control-Root41.473

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved