Gene detail information of Glyur000443s00016866.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G74040.102-isopropylmalate synthase 1
NRXP_004497478.10PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cicer arietinum]
COGYP_004172963.102-isopropylmalate synthase [Anaerolinea thermophila UNI-1]
Swissprottr|Q9C550|LEU12_ARATH02-isopropylmalate synthase 2, chloroplastic (Precursor)
trEMBLtr|I1NJA5|I1NJA5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38950.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00443154282160560-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01649leuA EC:2.3.3.13 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Pyruvate metabolismmap00620
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0009098  leucine biosynthetic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003852  2-isopropylmalate synthase activity

GO:0046912  transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000443s00016866.1PF00682.14HMGL-like782003.50E-30
Glyur000443s00016866.1PF08502.5LeuA_dimer4225457.60E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.848
SRR1783600control24.314
SRR1783602moderate drought stress30.449
SRR1811619moderate drought stress30.037

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.976
DRR006520Root Summer glycyrrhizin high producing strain39.845
DRR006521Root Winter glycyrrhizin high producing strain43.594
DRR006522Root Winter glycyrrhizin high producing strain42.114
DRR006523Root Summer glycyrrhizin low producing strain46.551
DRR006524Root Summer glycyrrhizin low producing strain46.451
DRR006525Leaf Summer glycyrrhizin high producing strain42.964
DRR006526Leaf Summer glycyrrhizin high producing strain43.175

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.123
SRR2868004Drought Stress(Tissue:root)33.259
SRR2967015Control (Tissue:root)38.403

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.097
SRR9715740Leave33.230
SRR9715741Leave30.057
SRR9715739Root21.511
SRR9715742Root25.893
SRR9715743Root26.935

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.244
SRR8749028MeJA induced 9h30.087
SRR8749029MeJA induced 9h22.999
SRR8749030Uninduced14.655
SRR8749031Uninduced10.816
SRR8749032Uninduced12.025

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.035
SRR8400027Control-Root32.746

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved