Gene detail information of Glyur000444s00022224.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G07270.10XB3 ortholog 3 in Arabidopsis thaliana
NRKEH43741.10E3 ubiquitin-protein ligase XBOS33, putative [Medicago truncatula]
COGYP_001958273.14.00E-20hypothetical protein Aasi_1217 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q4FE45|XB33_ARATH0E3 ubiquitin-protein ligase XBAT33
trEMBLtr|A0A072VPZ6|A0A072VPZ6_MEDTR0E3 ubiquitin-protein ligase XBOS33, putative {ECO:0000313|EMBL:KEH43741.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00444859114090-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000444s00022224.1PF12796.2Ank_2141041.30E-19
Glyur000444s00022224.1PF12796.2Ank_21072051.00E-10
Glyur000444s00022224.1PF13857.1Ank_52202611.10E-09
Glyur000444s00022224.1PF13920.1zf-C3HC4_33614171.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.002
SRR1783600control12.958
SRR1783602moderate drought stress15.473
SRR1811619moderate drought stress15.463

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.107
DRR006520Root Summer glycyrrhizin high producing strain19.620
DRR006521Root Winter glycyrrhizin high producing strain88.243
DRR006522Root Winter glycyrrhizin high producing strain86.026
DRR006523Root Summer glycyrrhizin low producing strain24.060
DRR006524Root Summer glycyrrhizin low producing strain24.119
DRR006525Leaf Summer glycyrrhizin high producing strain7.864
DRR006526Leaf Summer glycyrrhizin high producing strain7.904

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.902
SRR2868004Drought Stress(Tissue:root)40.260
SRR2967015Control (Tissue:root)50.230

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.330
SRR9715740Leave12.558
SRR9715741Leave11.861
SRR9715739Root14.349
SRR9715742Root19.031
SRR9715743Root17.001

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.230
SRR8749028MeJA induced 9h14.657
SRR8749029MeJA induced 9h7.290
SRR8749030Uninduced10.505
SRR8749031Uninduced5.895
SRR8749032Uninduced6.544

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.955
SRR8400027Control-Root25.622

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved