Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000446s00029759.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13700.1	3.00E-95	6-phosphogluconolactonase 1
NR	XP_007153497.1	8.42E-173	hypothetical protein PHAVU_003G040800g [Phaseolus vulgaris]
COG	YP_001321257.1	1.00E-48	6-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF]
Swissprot	tr\|Q9LMX8\|6PGL1_ARATH	2.00E-124	Probable 6-phosphogluconolactonase 1
trEMBL	tr\|V7C993\|V7C993_PHAVU	3.00E-173	Uncharacterized protein {ECO:0000313\|EMBL:ESW25491.1}

Sequence

Transcript Sequence

>Glyur000446s00029759.1
GCTGGGTGCAGCTTCAGAGGAAAAGCTTGTCAGTATGAACCAGGCACCACCATCCATGGACATGTTGCTGTTAGCTGACGCCTCTGAGCTATTGAACTCTTCCAAAGTCCAAACCATGGCTCTCTCTGGTGGTCTTAAAAATAGAGGAGAGTTGAGGATTCATGAGAGGTTGGATGATCTGAGTGCTGATTTGGCAGACTTTATTGCTGAAATATCAGACGCATCTGTGAAGGAGNGGGGAGCCTTTGCCATTGCTTTATCTGGTGGTTCTCTCATTGGCTTAATGGGAAAACTCTTAGGAGCTCCTTATAACAAGACAGTGGACTGGTCCAAGTGGTATATCTTCTGGGCTGATGAGCGTGTTGTGGCGAAAAACCATGCTGATAGCAATTATAAGCTTGCTAANGATGGCCTTTTGTCTAAGGTGCCTATTGTCCCCAATCATGTGCATTCTATTAATGATTCTTTGTCAGCAGAAGAAGCTGCTGATGATTACGAGTTTGTCATCCGGCAGTTAGTAAAAACCCGCATTATCAGCGTGTCTGAGATTAATGACTGCCCAAAGTTTGATCTCATTCTGCTTGGATTGGGTCCGGATGGCCATGTCGCCTCTCTTTTTCCTAATCACTCAGCACTCAATGAAAGGGAAGAATGGGTAACTTTCATTACTGACTCGCCTAAACCCCCACCTGAGAGAATCACATTCACGATGCCTGTTATCAATTCTGCATCCAATGTAGCAGTGGTCGTCGCAGGTGACAGCAAAGCGGATGCTGTACACCTGGCAATAGATGATGTTGAACCCGATTGCCCATTAGTACCGGGTAGAATGATCCAACCAGTTATGGGGAGGTTGGTGTGGTTTTTGGATACACTGGCTGCCTCAAAGCTTGAAGATTCCAATTTGAACAAGTACTAGTGTGAAGGCCCCTTGCAAGAGAAGCAAGTTTGTATGTAGTGTTAAGGCACTTGACAAAGTGTTGATCCTAGATCCTGCCTCTTTCTTTTTCTTTTGGATAGAAAGTCTTTGTTCTCTGCCTTTTCTTGCTCTCTTCTGGAAGGTTGTTTNGATAAGTTTGGTATAGTTTTTGTAAGAGGCCAATAAAAAGTTGAGAGCATCATTCCAACTGCCTTCTTTCCTTCCAAATCATCATTGGGTTATTGATTGGTTATGATGATGGTCTCTTCTGGTTGCAATCATCAATTACTTTAATTACTTTATAAGAAAAGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00446	14572	30043	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01057	PGLS, pgl, devB	EC:3.1.1.31	Carbon metabolism	map01200
K01057	PGLS, pgl, devB	EC:3.1.1.31	Pentose phosphate pathway	map00030

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006098 pentose-phosphate shunt

molecular_function GO:0017057 6-phosphogluconolactonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000446s00029759.1	PF01182.15	Glucosamine_iso	50	252	3.20E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.999
SRR1783600	control	72.172
SRR1783602	moderate drought stress	65.938
SRR1811619	moderate drought stress	65.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.535
DRR006520	Root Summer glycyrrhizin high producing strain	52.050
DRR006521	Root Winter glycyrrhizin high producing strain	45.213
DRR006522	Root Winter glycyrrhizin high producing strain	44.728
DRR006523	Root Summer glycyrrhizin low producing strain	34.051
DRR006524	Root Summer glycyrrhizin low producing strain	34.179
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.483
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.217

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	80.949
SRR2868004	Drought Stress(Tissue:root)	83.221
SRR2967015	Control (Tissue:root)	60.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	31.730
SRR9715740	Leave	39.976
SRR9715741	Leave	42.112
SRR9715739	Root	53.308
SRR9715742	Root	39.635
SRR9715743	Root	39.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.575
SRR8749028	MeJA induced 9h	29.796
SRR8749029	MeJA induced 9h	32.484
SRR8749030	Uninduced	47.028
SRR8749031	Uninduced	28.176
SRR8749032	Uninduced	43.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	64.985
SRR8400027	Control-Root	64.835