Gene detail information of Glyur000446s00029763.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G13690.11.00E-52ATPase E1
NRXP_004490215.17.84E-94PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Cicer arietinum]
COGYP_001516937.14.00E-14RNA-binding protein [Acaryochloris marina MBIC11017]
Swissprottr|Q9FNR1|RBG3_ARATH5.00E-17Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBLtr|I1JEH5|I1JEH5_SOYBN4.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G13280.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004464017741578-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09564PPIE EC:5.2.1.8 Spliceosome map03040


Gene Ontology

molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000446s00029763.1PF00076.17RRM_112811.20E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.683
SRR1783600control37.368
SRR1783602moderate drought stress37.515
SRR1811619moderate drought stress37.929

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.547
DRR006520Root Summer glycyrrhizin high producing strain57.834
DRR006521Root Winter glycyrrhizin high producing strain21.081
DRR006522Root Winter glycyrrhizin high producing strain19.440
DRR006523Root Summer glycyrrhizin low producing strain70.138
DRR006524Root Summer glycyrrhizin low producing strain69.251
DRR006525Leaf Summer glycyrrhizin high producing strain63.156
DRR006526Leaf Summer glycyrrhizin high producing strain63.472

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.680
SRR2868004Drought Stress(Tissue:root)50.011
SRR2967015Control (Tissue:root)48.128

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave54.818
SRR9715740Leave86.207
SRR9715741Leave64.911
SRR9715739Root18.272
SRR9715742Root41.519
SRR9715743Root34.391

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h143.095
SRR8749028MeJA induced 9h51.333
SRR8749029MeJA induced 9h82.867
SRR8749030Uninduced14.415
SRR8749031Uninduced3.969
SRR8749032Uninduced6.746

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.608
SRR8400027Control-Root49.219

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved