Gene detail information of Glyur000447s00016634.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09530.2 | 4.00E-45 | phytochrome interacting factor 3 |
| NR | AES82347.2 | 0 | phytochrome-interacting factor 3.1 [Medicago truncatula] |
| Swissprot | tr|Q9SBC5|PIF3_ARATH | 2.00E-58 | Transcription factor PIF3 |
| trEMBL | tr|G7KVK4|G7KVK4_MEDTR | 0 | Phytochrome-interacting factor 3.1 {ECO:0000313|EMBL:AES82347.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00447 | 15262 | 19047 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000447s00016634.1 | PF00010.21 | HLH | 472 | 518 | 1.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.135 |
| SRR1783600 | control | 2.177 |
| SRR1783602 | moderate drought stress | 2.829 |
| SRR1811619 | moderate drought stress | 2.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.846 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.795 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.735 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.830 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.112 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.227 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.724 |
| SRR2967015 | Control (Tissue:root) | 9.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.715 |
| SRR9715740 | Leave | 7.382 |
| SRR9715741 | Leave | 8.912 |
| SRR9715739 | Root | 0.762 |
| SRR9715742 | Root | 8.955 |
| SRR9715743 | Root | 6.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.625 |
| SRR8749028 | MeJA induced 9h | 7.957 |
| SRR8749029 | MeJA induced 9h | 8.219 |
| SRR8749030 | Uninduced | 3.996 |
| SRR8749031 | Uninduced | 2.676 |
| SRR8749032 | Uninduced | 4.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.095 |
| SRR8400027 | Control-Root | 11.697 |