Gene detail information of Glyur000448s00026712.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60710.10Zinc finger (C3HC4-type RING finger) family protein
NRXP_004487087.10PREDICTED: uncharacterized protein LOC101506031 [Cicer arietinum]
COGYP_004450159.12.00E-23von Willebrand factor A [Haliscomenobacter hydrossis DSM 1100]
trEMBLtr|A0A072VCQ9|A0A072VCQ9_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH39351.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004482269026987-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000448s00026712.1PF13639.1zf-RING_2761211.00E-09
Glyur000448s00026712.1PF00092.23VWA2574361.30E-24
Glyur000448s00026712.1PF14624.1Vwaint6056782.70E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.052
SRR1783600control2.075
SRR1783602moderate drought stress2.091
SRR1811619moderate drought stress2.054

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.945
DRR006520Root Summer glycyrrhizin high producing strain2.909
DRR006521Root Winter glycyrrhizin high producing strain0.481
DRR006522Root Winter glycyrrhizin high producing strain0.551
DRR006523Root Summer glycyrrhizin low producing strain2.477
DRR006524Root Summer glycyrrhizin low producing strain2.599
DRR006525Leaf Summer glycyrrhizin high producing strain7.425
DRR006526Leaf Summer glycyrrhizin high producing strain7.494

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.169
SRR2868004Drought Stress(Tissue:root)9.928
SRR2967015Control (Tissue:root)8.413

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.645
SRR9715740Leave3.751
SRR9715741Leave3.546
SRR9715739Root2.177
SRR9715742Root3.765
SRR9715743Root3.473

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.877
SRR8749028MeJA induced 9h26.939
SRR8749029MeJA induced 9h12.640
SRR8749030Uninduced29.760
SRR8749031Uninduced29.722
SRR8749032Uninduced30.155

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.784
SRR8400027Control-Root5.471

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved