Gene detail information of Glyur000448s00026713.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37040.10PHE ammonia lyase 1
NRKEH39353.10phenylalanine ammonia-lyase-like protein [Medicago truncatula]
COGYP_007127054.14.00E-81histidine ammonia-lyase [Gloeocapsa sp. PCC 7428]
Swissprottr|P45726|PALY_CAMSI0Phenylalanine ammonia-lyase
trEMBLtr|A0A072VD63|A0A072VD63_MEDTR0Phenylalanine ammonia-lyase-like protein {ECO:0000313|EMBL:KEH39353.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004485989062809+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000448s00026713.1PF00221.14Lyase_aromatic475381.40E-171


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.031
SRR1783600control1.081
SRR1783602moderate drought stress2.889
SRR1811619moderate drought stress2.868

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.965
DRR006520Root Summer glycyrrhizin high producing strain6.760
DRR006521Root Winter glycyrrhizin high producing strain4.036
DRR006522Root Winter glycyrrhizin high producing strain3.953
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain2.395
DRR006526Leaf Summer glycyrrhizin high producing strain2.390

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.754
SRR2868004Drought Stress(Tissue:root)0.950
SRR2967015Control (Tissue:root)1.329

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.905
SRR9715740Leave1.345
SRR9715741Leave0.791
SRR9715739Root0.286
SRR9715742Root1.570
SRR9715743Root0.967

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.274
SRR8749028MeJA induced 9h0.123
SRR8749029MeJA induced 9h0.068
SRR8749030Uninduced0.058
SRR8749031Uninduced0.219
SRR8749032Uninduced0.446

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.017
SRR8400027Control-Root0.802

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved