Gene detail information of Glyur000448s00026714.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08060.24.00E-81ATP-dependent helicase family protein
NRXP_004487248.10PREDICTED: uncharacterized protein LOC101507124 [Cicer arietinum]
COGYP_004462436.11.00E-14SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprottr|Q9M658|MOM1_ARATH5.00E-132Helicase protein MOM1
trEMBLtr|B9I6P2|B9I6P2_POPTR0MORPHEUS MOLECULE family protein {ECO:0000313|EMBL:EEE94860.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004486326978994-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000448s00026714.1PF00385.19Chromo4554954.40E-05
Glyur000448s00026714.1PF00385.19Chromo5385550.00017
Glyur000448s00026714.1PF00176.18SNF2_N6477721.30E-08
Glyur000448s00026714.1PF00271.26Helicase_C96110280.00046


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.189
SRR1783600control6.196
SRR1783602moderate drought stress9.357
SRR1811619moderate drought stress9.350

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.179
DRR006520Root Summer glycyrrhizin high producing strain7.095
DRR006521Root Winter glycyrrhizin high producing strain8.918
DRR006522Root Winter glycyrrhizin high producing strain8.777
DRR006523Root Summer glycyrrhizin low producing strain8.928
DRR006524Root Summer glycyrrhizin low producing strain8.941
DRR006525Leaf Summer glycyrrhizin high producing strain3.161
DRR006526Leaf Summer glycyrrhizin high producing strain3.128

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.375
SRR2868004Drought Stress(Tissue:root)9.642
SRR2967015Control (Tissue:root)11.036

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.803
SRR9715740Leave2.789
SRR9715741Leave3.233
SRR9715739Root0.771
SRR9715742Root4.310
SRR9715743Root4.203

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.102
SRR8749028MeJA induced 9h7.427
SRR8749029MeJA induced 9h3.680
SRR8749030Uninduced5.171
SRR8749031Uninduced3.145
SRR8749032Uninduced3.849

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.235
SRR8400027Control-Root8.878

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved