Gene detail

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Gene detail information of Glyur000450s00024049.3

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
NR	XP_004512487.1	PREDICTED: lysine-specific demethylase 5C-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q336N8\|JM706_ORYSJ	Lysine-specific demethylase JMJ706
trEMBL	tr\|K7LF38\|K7LF38_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G34040.2}

Sequence

Transcript Sequence

>Glyur000450s00024049.3
TTCGCTCCCTCTCTTTCCTCAACACTATTTCTCTCCGTTTCCTCTTTTCTCGCCGGGAAACCTTTTCCGTCCGCCGGAAAACCGCCTCTGCCATCTTCGACCTTTTTCCCGCGCCTTTGTAGGAAGCTGGTCACGGTCTTCCGATTGAAACGCTTGCATTCCCTCGAAATTTGCCGTGGTTGCTCCTACCAGGCGTTGGATCTCTCTGTGACGCCGTATCATCCTCGTACTCGGCGTTGTTTCGAGAATGTGGTGAGCCAGTTAACGAAGACGGAGACCTACAGGGCGCGACTTCGGAATGAGATGGTGGAAGGAAGAGTGCGTATATCTAAGGAAGCTAGAAATGGGTTAGAAATTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGCCACTGCCACCCAGACAAGTATTGCGAACATGATGAACAGAAGTGGAGGAGATGCGTTAAGAGCTTCAGCTTCATGTGGCACGAGATTGCATGGTAATGCAGATGCCTTTTTCAAGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGATTGGACTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAAGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAAAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACCGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAACTACACATTTCGTGATTTTGAGAAAATGGCGAACAAAGTTTTTGCACGAAGATATTGCAGCACTGGATGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCAAGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCGTCTTCTCCTACAGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCCAGGTTGCCCAAATCAACTTTGCGGCTCTTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAATTATCAGCACTGTGGAGCATCAAAAACATGGTATGGTATCCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTACTGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTAGGGAAAACAACACTATTTCCACCTAACATTCTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCACTAGGTGATTGGTTTCCTCTAGGGGCTATTGCCAGCCGGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAAGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTGGAAGATTCAGACTTCCCCTCTTCAGACTTGTTTTCTCATAATAGAATTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCTTGTTGGTTACTAATGAAATCAAGGACACNTATAAGCGTCTCTTCTCATTCGCATGGCACGATTCTCTGTAGCCTCTGCAAACGTGACTGTTATATAGCTTATGTTGACTGCAACTGTCACATGCATCCTGTATGCCTACGTCATGAGGTTGAATCTCTTGACTTCATCTGTGGGAGCAAACACACTCTTTATTTGAGGGAGGATATTACAGATATGGAAGCTGCTGCCAAGACGTTTGANCAGGAAGATGGGATATTGGACGAGATAAGCAAGCAAACCAAAAGTGACCAAAATATGTATTCATATCCTTTGTCAGATATGTTTCATAGAGCTGAAGCAAATGGATACTCACCTTATTGTGAGCTTAAACTTGATTCTGTGGTTGAATTTTATACAACTCCAGAACAATCAACAAATAATCAAGAGTGTGGTACACAAAATCAATTTGTTTTCAGACATTGTTCTGAAAATCATAAACCAGAAGTGTCTGAGGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCCGAACCTCTTGAGAGCTCCTCTGCTCCCAAAAATGCCGAGGGGCAGACTAACTTCAATTTAAACATTATTGATTGCGAAGAACTTGGCCAAAGACAATCCAACAGTACGTGTGAATCTTCACTATCCCCTGCCCTGTATCATGAAAGCTCGGCTAAACTGCATGGCGATCTTCAGAGATCTGACATGAAGCCCATAGTGGATAATGAGAGTGATGATTCTGATTCAGAGATATTTCGGGTGAAGCGCCCTTCTTCGCTGAAAGCAGAGAGGAGAAATGCAAATGTTGTGTCTTCAAAGCATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCNTTCCTGAAGGAAAAAACGGGCAACCAATGGATTTCAGAACCAATGAATCAAGTTACAAACAAAGTCACCCTGTTAATCATAAAGTTGATAACGAAGTTTCCTCGAGGGACAGATTTGCAAAGGGAAATGGCATTCCCATTTCTATAAGATACAAGAAGTTGGGCAATGAGGAAATAAGTATGCAACGAGATCACCACCGGAGAGAGAGGTTGCAACAAANTTTTAGGGAACCGCCTTCCATTGAGATTGGGCCAAAGCGCCTTAAAGTCCGAGGCCTTAAATTTTGGGCAATCTGCACTGGTGGTGATCCTTTAGGTTCTCTGGCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00450	2841	22213	-

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000450s00024049.3	PF02375.12	JmjN	190	222	2.10E-14
Glyur000450s00024049.3	PF02373.17	JmjC	366	489	3.80E-39
Glyur000450s00024049.3	PF02928.11	zf-C5HC2	586	638	4.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.367
SRR1783600	control	2.286
SRR1783602	moderate drought stress	1.481
SRR1811619	moderate drought stress	1.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.641
DRR006520	Root Summer glycyrrhizin high producing strain	10.570
DRR006521	Root Winter glycyrrhizin high producing strain	2.117
DRR006522	Root Winter glycyrrhizin high producing strain	2.278
DRR006523	Root Summer glycyrrhizin low producing strain	26.904
DRR006524	Root Summer glycyrrhizin low producing strain	26.764
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.404
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.225
SRR2868004	Drought Stress(Tissue:root)	27.768
SRR2967015	Control (Tissue:root)	18.926

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	41.444
SRR9715740	Leave	20.281
SRR9715741	Leave	62.971
SRR9715739	Root	11.320
SRR9715742	Root	45.687
SRR9715743	Root	42.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.995
SRR8749028	MeJA induced 9h	37.029
SRR8749029	MeJA induced 9h	26.130
SRR8749030	Uninduced	49.845
SRR8749031	Uninduced	52.048
SRR8749032	Uninduced	34.467

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	12.522
SRR8400027	Control-Root	18.278