Gene detail information of Glyur000450s00024062.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32170.18.00E-115xyloglucan endotransglucosylase/hydrolase 30
NRKEH27691.10xyloglucan endotransglucosylase/hydrolase family protein [Medicago truncatula]
COGYP_003060495.13.00E-12glycoside hydrolase family protein [Hirschia baltica ATCC 49814]
Swissprottr|Q38908|XTH30_ARATH3.00E-144Probable xyloglucan endotransglucosylase/hydrolase protein 30 (Precursor)
trEMBLtr|A0A072UE10|A0A072UE10_MEDTR0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00450137938141210-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000450s00024062.1PF00722.16Glyco_hydro_16371915.50E-49
Glyur000450s00024062.1PF06955.7XET_C2222718.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.728
SRR1783600control43.906
SRR1783602moderate drought stress44.384
SRR1811619moderate drought stress44.401

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.955
DRR006520Root Summer glycyrrhizin high producing strain30.393
DRR006521Root Winter glycyrrhizin high producing strain41.290
DRR006522Root Winter glycyrrhizin high producing strain40.496
DRR006523Root Summer glycyrrhizin low producing strain207.907
DRR006524Root Summer glycyrrhizin low producing strain204.830
DRR006525Leaf Summer glycyrrhizin high producing strain15.875
DRR006526Leaf Summer glycyrrhizin high producing strain16.899

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)87.915
SRR2868004Drought Stress(Tissue:root)125.696
SRR2967015Control (Tissue:root)114.783

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave153.181
SRR9715740Leave218.344
SRR9715741Leave250.669
SRR9715739Root35.740
SRR9715742Root45.186
SRR9715743Root44.456

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h157.291
SRR8749028MeJA induced 9h246.510
SRR8749029MeJA induced 9h227.941
SRR8749030Uninduced222.319
SRR8749031Uninduced234.637
SRR8749032Uninduced221.778

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root99.329
SRR8400027Control-Root91.750

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved