Gene detail information of Glyur000451s00016515.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G69770.10chromomethylase 3
NRXP_004513047.10PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum]
COGYP_003526742.19.00E-52NUDIX hydrolase [Nitrosococcus halophilus Nc 4]
Swissprottr|Q94F88|CMT3_ARATH0DNA (cytosine-5)-methyltransferase CMT3
trEMBLtr|K7K149|K7K149_SOYBN0Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00451687124993+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00558DNMT1, dcm EC:2.1.1.37 Cysteine and methionine metabolism map00270
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006306  DNA methylation


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0008168  methyltransferase activity

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000451s00016515.1PF00145.12DNA_methylase5648884.70E-25
Glyur000451s00016515.1PF00293.23NUDIX109312021.30E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.067
SRR1783600control5.089
SRR1783602moderate drought stress2.286
SRR1811619moderate drought stress2.504

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.612
DRR006520Root Summer glycyrrhizin high producing strain6.625
DRR006521Root Winter glycyrrhizin high producing strain5.396
DRR006522Root Winter glycyrrhizin high producing strain5.052
DRR006523Root Summer glycyrrhizin low producing strain3.499
DRR006524Root Summer glycyrrhizin low producing strain3.433
DRR006525Leaf Summer glycyrrhizin high producing strain2.026
DRR006526Leaf Summer glycyrrhizin high producing strain1.987

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.420
SRR2868004Drought Stress(Tissue:root)11.181
SRR2967015Control (Tissue:root)12.515

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.876
SRR9715740Leave1.449
SRR9715741Leave1.356
SRR9715739Root2.002
SRR9715742Root2.792
SRR9715743Root2.469

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.556
SRR8749028MeJA induced 9h18.236
SRR8749029MeJA induced 9h12.317
SRR8749030Uninduced4.053
SRR8749031Uninduced6.124
SRR8749032Uninduced4.341

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.424
SRR8400027Control-Root14.569

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved