Gene detail information of Glyur000451s00016521.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28415.10ABC transporter family protein
NRXP_002514211.10multidrug resistance protein 1, 2, putative [Ricinus communis]
COGYP_005367043.11.00E-89efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9LSJ2|AB22B_ARATH0ABC transporter B family member 22
trEMBLtr|B9RKG7|B9RKG7_RICCO0Multidrug resistance protein 1, 2, putative {ECO:0000313|EMBL:EEF48165.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004514958058628+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000451s00016521.1PF00664.18ABC_membrane571653.30E-11
Glyur000451s00016521.1PF00005.22ABC_tran3444891.50E-23
Glyur000451s00016521.1PF00664.18ABC_membrane6377485.80E-10
Glyur000451s00016521.1PF00664.18ABC_membrane7498422.50E-15
Glyur000451s00016521.1PF00005.22ABC_tran91810611.60E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.167
SRR1783600control5.149
SRR1783602moderate drought stress3.799
SRR1811619moderate drought stress3.870

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.985
DRR006520Root Summer glycyrrhizin high producing strain1.898
DRR006521Root Winter glycyrrhizin high producing strain0.031
DRR006522Root Winter glycyrrhizin high producing strain0.016
DRR006523Root Summer glycyrrhizin low producing strain0.365
DRR006524Root Summer glycyrrhizin low producing strain0.276
DRR006525Leaf Summer glycyrrhizin high producing strain0.161
DRR006526Leaf Summer glycyrrhizin high producing strain0.106

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.577
SRR2868004Drought Stress(Tissue:root)6.619
SRR2967015Control (Tissue:root)6.049

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.019
SRR9715741Leave0.019
SRR9715739Root0.553
SRR9715742Root1.988
SRR9715743Root1.762

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.047
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.652
SRR8749031Uninduced0.064
SRR8749032Uninduced0.879

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.485
SRR8400027Control-Root4.593

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved