Gene detail information of Glyur000452s00029832.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53300.43.00E-80ubiquitin-conjugating enzyme 10
NRNP_001241358.18.36E-103uncharacterized protein LOC100806349 [Glycine max]
COGYP_008797956.12.00E-22ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35133|UBC10_ARATH4.00E-102Ubiquitin-conjugating enzyme E2 10
trEMBLtr|C6TAY6|C6TAY6_SOYBN3.00E-103Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G29120.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004527172674885+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000452s00029832.1PF00179.21UQ_con51492.30E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control433.588
SRR1783600control436.295
SRR1783602moderate drought stress223.468
SRR1811619moderate drought stress227.021

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain841.394
DRR006520Root Summer glycyrrhizin high producing strain831.295
DRR006521Root Winter glycyrrhizin high producing strain283.177
DRR006522Root Winter glycyrrhizin high producing strain272.590
DRR006523Root Summer glycyrrhizin low producing strain1438.503
DRR006524Root Summer glycyrrhizin low producing strain1442.410
DRR006525Leaf Summer glycyrrhizin high producing strain232.966
DRR006526Leaf Summer glycyrrhizin high producing strain230.751

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)282.034
SRR2868004Drought Stress(Tissue:root)327.600
SRR2967015Control (Tissue:root)294.035

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave642.095
SRR9715740Leave604.588
SRR9715741Leave756.881
SRR9715739Root532.841
SRR9715742Root853.979
SRR9715743Root744.962

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h984.882
SRR8749028MeJA induced 9h890.908
SRR8749029MeJA induced 9h1476.347
SRR8749030Uninduced1715.032
SRR8749031Uninduced1383.566
SRR8749032Uninduced1942.943

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root325.292
SRR8400027Control-Root550.659

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved