Gene detail information of Glyur000453s00023813.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80630.1 | 2.00E-83 | RNI-like superfamily protein |
| NR | AES86488.2 | 0 | F-box/LRR protein [Medicago truncatula] |
| Swissprot | tr|O49286|SKP2B_ARATH | 1.00E-12 | F-box protein SKP2B |
| trEMBL | tr|G7JFM9|G7JFM9_MEDTR | 0 | F-box/LRR protein {ECO:0000313|EMBL:AES86488.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00453 | 35584 | 45514 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.274 |
| SRR1783600 | control | 0.285 |
| SRR1783602 | moderate drought stress | 0.356 |
| SRR1811619 | moderate drought stress | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.243 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.181 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.396 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.386 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.686 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.278 |
| SRR2967015 | Control (Tissue:root) | 1.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.030 |
| SRR9715740 | Leave | 0.066 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.045 |
| SRR9715742 | Root | 0.439 |
| SRR9715743 | Root | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.032 |
| SRR8749028 | MeJA induced 9h | 0.748 |
| SRR8749029 | MeJA induced 9h | 0.298 |
| SRR8749030 | Uninduced | 0.334 |
| SRR8749031 | Uninduced | 1.001 |
| SRR8749032 | Uninduced | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.804 |
| SRR8400027 | Control-Root | 0.522 |