Gene detail information of Glyur000453s00023815.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20960.20U5 small nuclear ribonucleoprotein helicase, putative
NRXP_003595992.10U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula]
COGYP_005838828.12.00E-72DEAD/DEAH box helicase [Haloquadratum walsbyi C23]
Swissprottr|Q588V7|TEB_ARATH5.00E-30Helicase and polymerase-containing protein TEBICHI
trEMBLtr|K7MDW5|K7MDW5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G40460.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004535204059221-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12854SNRNP200, BRR2 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000453s00023815.1PF00270.24DEAD5046821.30E-28
Glyur000453s00023815.1PF00271.26Helicase_C7998785.80E-09
Glyur000453s00023815.1PF02889.11Sec63100110961.80E-31
Glyur000453s00023815.1PF02889.11Sec63112813675.70E-78
Glyur000453s00023815.1PF00270.24DEAD141015782.20E-25
Glyur000453s00023815.1PF02889.11Sec63189522148.50E-94


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.641
SRR1783600control0.712
SRR1783602moderate drought stress0.740
SRR1811619moderate drought stress0.712

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.827
DRR006520Root Summer glycyrrhizin high producing strain0.840
DRR006521Root Winter glycyrrhizin high producing strain1.125
DRR006522Root Winter glycyrrhizin high producing strain0.997
DRR006523Root Summer glycyrrhizin low producing strain1.419
DRR006524Root Summer glycyrrhizin low producing strain1.622
DRR006525Leaf Summer glycyrrhizin high producing strain0.454
DRR006526Leaf Summer glycyrrhizin high producing strain0.442

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.566
SRR2868004Drought Stress(Tissue:root)1.430
SRR2967015Control (Tissue:root)1.308

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.274
SRR9715740Leave0.184
SRR9715741Leave0.246
SRR9715739Root0.100
SRR9715742Root0.937
SRR9715743Root0.643

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.221
SRR8749028MeJA induced 9h1.226
SRR8749029MeJA induced 9h0.397
SRR8749030Uninduced0.214
SRR8749031Uninduced0.102
SRR8749032Uninduced0.242

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.224
SRR8400027Control-Root1.181

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved