Gene detail information of Glyur000453s00023826.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80730.1 | 3.00E-30 | zinc-finger protein 1 |
| NR | XP_006585613.1 | 5.00E-94 | PREDICTED: zinc finger protein 3-like [Glycine max] |
| Swissprot | tr|Q42485|ZFP1_ARATH | 2.00E-36 | Zinc finger protein 1 |
| trEMBL | tr|I1KVJ9|I1KVJ9_SOYBN | 2.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G23210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00453 | 125422 | 126165 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.687 |
| SRR1783600 | control | 0.633 |
| SRR1783602 | moderate drought stress | 0.387 |
| SRR1811619 | moderate drought stress | 0.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.289 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.691 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.781 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.458 |
| SRR2967015 | Control (Tissue:root) | 0.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.043 |
| SRR9715740 | Leave | 0.446 |
| SRR9715741 | Leave | 1.080 |
| SRR9715739 | Root | 0.399 |
| SRR9715742 | Root | 0.488 |
| SRR9715743 | Root | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.158 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 0.122 |
| SRR8749032 | Uninduced | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.762 |
| SRR8400027 | Control-Root | 0.684 |