Gene detail information of Glyur000454s00019907.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G42340.1 | 0 | Plant U-Box 15 |
NR | XP_003551670.2 | 0 | PREDICTED: U-box domain-containing protein 15-like [Glycine max] |
COG | YP_001957949.1 | 1.00E-12 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
Swissprot | tr|Q681N2|PUB15_ARATH | 0 | U-box domain-containing protein 15 |
trEMBL | tr|I1N3T8|I1N3T8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47120.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00454 | 33777 | 37077 | - |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | U_box |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000454s00019907.1 | PF04564.10 | U-box | 274 | 344 | 7.80E-25 |
Glyur000454s00019907.1 | PF00514.18 | Arm | 397 | 436 | 8.30E-12 |
Glyur000454s00019907.1 | PF00514.18 | Arm | 480 | 518 | 1.40E-05 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.000 |
SRR1783600 | control | 0.000 |
SRR1783602 | moderate drought stress | 0.000 |
SRR1811619 | moderate drought stress | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.098 |
SRR2868004 | Drought Stress(Tissue:root) | 0.127 |
SRR2967015 | Control (Tissue:root) | 0.243 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.000 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.005 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.000 |
SRR9715743 | Root | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.000 |
SRR8749028 | MeJA induced 9h | 0.000 |
SRR8749029 | MeJA induced 9h | 0.000 |
SRR8749030 | Uninduced | 0.000 |
SRR8749031 | Uninduced | 0.020 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.009 |
SRR8400027 | Control-Root | 0.052 |