Gene detail information of Glyur000454s00019918.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61460.15.00E-36brassinosteroid-responsive RING-H2
NRXP_003552405.12.18E-77PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Glycine max]
Swissprottr|Q9SUS4|RHA1A_ARATH1.00E-25RING-H2 zinc finger protein RHA1a
trEMBLtr|I1N3T0|I1N3T0_SOYBN8.00E-78Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47020.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004548671087240+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000454s00019918.1PF13639.1zf-RING_2901338.70E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control224.159
SRR1783600control224.889
SRR1783602moderate drought stress177.739
SRR1811619moderate drought stress171.182

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain214.599
DRR006520Root Summer glycyrrhizin high producing strain214.402
DRR006521Root Winter glycyrrhizin high producing strain11.644
DRR006522Root Winter glycyrrhizin high producing strain11.758
DRR006523Root Summer glycyrrhizin low producing strain161.172
DRR006524Root Summer glycyrrhizin low producing strain162.275
DRR006525Leaf Summer glycyrrhizin high producing strain112.258
DRR006526Leaf Summer glycyrrhizin high producing strain110.047

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.224
SRR2868004Drought Stress(Tissue:root)38.517
SRR2967015Control (Tissue:root)42.387

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave105.778
SRR9715740Leave57.640
SRR9715741Leave126.952
SRR9715739Root81.104
SRR9715742Root109.277
SRR9715743Root100.646

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.507
SRR8749028MeJA induced 9h10.158
SRR8749029MeJA induced 9h7.631
SRR8749030Uninduced8.738
SRR8749031Uninduced5.731
SRR8749032Uninduced10.050

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root67.461
SRR8400027Control-Root76.945

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved