Gene detail information of Glyur000454s00019921.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00335.2 | 5.00E-45 | RING-H2 finger B1A |
| NR | XP_004492769.1 | 2.11E-102 | PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X3 [Cicer arietinum] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 1.00E-21 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|I1N3S7|I1N3S7_SOYBN | 2.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00454 | 116726 | 118559 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000454s00019921.1 | PF13639.1 | zf-RING_2 | 142 | 184 | 2.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.502 |
| SRR1783600 | control | 3.425 |
| SRR1783602 | moderate drought stress | 3.950 |
| SRR1811619 | moderate drought stress | 4.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.226 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.084 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.862 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.518 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.366 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.374 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.071 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.932 |
| SRR2967015 | Control (Tissue:root) | 25.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.946 |
| SRR9715740 | Leave | 26.657 |
| SRR9715741 | Leave | 25.214 |
| SRR9715739 | Root | 2.431 |
| SRR9715742 | Root | 7.190 |
| SRR9715743 | Root | 5.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.992 |
| SRR8749028 | MeJA induced 9h | 8.393 |
| SRR8749029 | MeJA induced 9h | 8.688 |
| SRR8749030 | Uninduced | 12.133 |
| SRR8749031 | Uninduced | 19.918 |
| SRR8749032 | Uninduced | 12.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.064 |
| SRR8400027 | Control-Root | 20.999 |