Gene detail information of Glyur000454s00019923.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46040.1 | 7.00E-63 | ARID/BRIGHT DNA-binding domain;ELM2 domain protein |
| NR | XP_004492764.1 | 0 | PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q84JT7|ARID1_ARATH | 2.00E-71 | AT-rich interactive domain-containing protein 1 |
| trEMBL | tr|K7MUC3|K7MUC3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46951.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00454 | 126072 | 129698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000454s00019923.1 | PF01388.16 | ARID | 7 | 59 | 9.60E-10 |
| Glyur000454s00019923.1 | PF01448.19 | ELM2 | 414 | 453 | 1.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.350 |
| SRR1783600 | control | 2.416 |
| SRR1783602 | moderate drought stress | 1.500 |
| SRR1811619 | moderate drought stress | 1.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.658 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.485 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.091 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.993 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.835 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.927 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.052 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.417 |
| SRR2967015 | Control (Tissue:root) | 6.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.085 |
| SRR9715740 | Leave | 2.977 |
| SRR9715741 | Leave | 3.087 |
| SRR9715739 | Root | 0.753 |
| SRR9715742 | Root | 2.636 |
| SRR9715743 | Root | 3.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.281 |
| SRR8749028 | MeJA induced 9h | 3.454 |
| SRR8749029 | MeJA induced 9h | 3.383 |
| SRR8749030 | Uninduced | 2.500 |
| SRR8749031 | Uninduced | 1.649 |
| SRR8749032 | Uninduced | 0.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.748 |
| SRR8400027 | Control-Root | 6.677 |