Gene detail information of Glyur000454s00019924.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63800.17.00E-75ubiquitin-conjugating enzyme 5
NRNP_001237603.14.15E-123ubiquitin carrier protein 4 [Glycine max]
COGYP_008797956.15.00E-15ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42749|UBC5_ARATH1.00E-103Ubiquitin-conjugating enzyme E2 5
trEMBLtr|I1MKV3|I1MKV3_SOYBN2.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03940.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00454134640136839+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10576UBE2H, UBC8 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000454s00019924.1PF00179.21UQ_con131422.60E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.450
SRR1783600control33.495
SRR1783602moderate drought stress40.814
SRR1811619moderate drought stress40.431

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.307
DRR006520Root Summer glycyrrhizin high producing strain35.539
DRR006521Root Winter glycyrrhizin high producing strain18.875
DRR006522Root Winter glycyrrhizin high producing strain18.331
DRR006523Root Summer glycyrrhizin low producing strain69.367
DRR006524Root Summer glycyrrhizin low producing strain69.780
DRR006525Leaf Summer glycyrrhizin high producing strain58.464
DRR006526Leaf Summer glycyrrhizin high producing strain58.477

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.921
SRR2868004Drought Stress(Tissue:root)92.999
SRR2967015Control (Tissue:root)73.286

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave78.637
SRR9715740Leave83.800
SRR9715741Leave92.278
SRR9715739Root11.473
SRR9715742Root19.801
SRR9715743Root19.912

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.787
SRR8749028MeJA induced 9h37.947
SRR8749029MeJA induced 9h37.163
SRR8749030Uninduced33.532
SRR8749031Uninduced36.805
SRR8749032Uninduced31.917

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.331
SRR8400027Control-Root67.943

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved