Gene detail information of Glyur000454s00019925.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G46020.20transcription regulatory protein SNF2, putative
NRXP_004492763.10PREDICTED: ATP-dependent helicase BRM-like [Cicer arietinum]
COGYP_003955642.12.00E-64snf2/helicase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q6EVK6|BRM_ARATH0ATP-dependent helicase BRM
trEMBLtr|I1N3S1|I1N3S1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00454137488151146-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000454s00019925.1PF00176.18SNF2_N100413101.80E-72
Glyur000454s00019925.1PF00271.26Helicase_C137114428.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.650
SRR1783600control16.874
SRR1783602moderate drought stress18.216
SRR1811619moderate drought stress18.242

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.629
DRR006520Root Summer glycyrrhizin high producing strain16.543
DRR006521Root Winter glycyrrhizin high producing strain7.889
DRR006522Root Winter glycyrrhizin high producing strain7.584
DRR006523Root Summer glycyrrhizin low producing strain16.057
DRR006524Root Summer glycyrrhizin low producing strain15.921
DRR006525Leaf Summer glycyrrhizin high producing strain9.992
DRR006526Leaf Summer glycyrrhizin high producing strain9.972

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.453
SRR2868004Drought Stress(Tissue:root)25.248
SRR2967015Control (Tissue:root)25.599

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.701
SRR9715740Leave10.753
SRR9715741Leave14.004
SRR9715739Root2.034
SRR9715742Root20.203
SRR9715743Root17.250

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.520
SRR8749028MeJA induced 9h14.102
SRR8749029MeJA induced 9h10.155
SRR8749030Uninduced10.653
SRR8749031Uninduced11.596
SRR8749032Uninduced10.073

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.580
SRR8400027Control-Root19.109

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved