Gene detail information of Glyur000454s00019927.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61440.11.00E-165cysteine synthase C1
NRXP_003623996.10Cysteine synthase [Medicago truncatula]
COGYP_591171.14.00E-116cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q1KLZ2|CAS1_MALDO0L-3-cyanoalanine synthase 1, mitochondrial (Precursor)
trEMBLtr|G7L5N4|G7L5N4_MEDTR0Cysteine synthase {ECO:0000256|RuleBase:RU003985}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00454157393160709-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13034ATCYSC1 EC:2.5.1.47 4.4.1.9 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Cyanoamino acid metabolismmap00460


Gene Ontology

biological_process

GO:0006535  cysteine biosynthetic process from serine


molecular_function

GO:0004124  cysteine synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000454s00019927.1PF00291.20PALP693561.90E-60


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.196
SRR1783600control10.375
SRR1783602moderate drought stress2.186
SRR1811619moderate drought stress2.192

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.986
DRR006520Root Summer glycyrrhizin high producing strain1.859
DRR006521Root Winter glycyrrhizin high producing strain6.093
DRR006522Root Winter glycyrrhizin high producing strain6.229
DRR006523Root Summer glycyrrhizin low producing strain3.247
DRR006524Root Summer glycyrrhizin low producing strain3.230
DRR006525Leaf Summer glycyrrhizin high producing strain65.000
DRR006526Leaf Summer glycyrrhizin high producing strain64.970

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.535
SRR2868004Drought Stress(Tissue:root)50.190
SRR2967015Control (Tissue:root)28.133

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave70.321
SRR9715740Leave41.587
SRR9715741Leave58.236
SRR9715739Root1.867
SRR9715742Root26.632
SRR9715743Root20.535

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.028
SRR8749028MeJA induced 9h76.238
SRR8749029MeJA induced 9h53.038
SRR8749030Uninduced292.345
SRR8749031Uninduced334.335
SRR8749032Uninduced198.709

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.201
SRR8400027Control-Root21.500

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved