Gene detail information of Glyur000455s00015981.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51840.10acyl-CoA oxidase 4
NRXP_006576135.10PREDICTED: acyl-CoA oxidase isoform X1 [Glycine max]
COGYP_002461466.14.00E-135acyl-CoA dehydrogenase domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprottr|Q96329|ACOX4_ARATH0Acyl-coenzyme A oxidase 4, peroxisomal
trEMBLtr|I1JLD2|I1JLD2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G07540.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004555234460188+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000455s00015981.1PF02771.11Acyl-CoA_dh_N191212.40E-18
Glyur000455s00015981.1PF02770.14Acyl-CoA_dh_M1271775.20E-18
Glyur000455s00015981.1PF00441.19Acyl-CoA_dh_12373773.00E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.338
SRR1783600control3.406
SRR1783602moderate drought stress2.929
SRR1811619moderate drought stress2.926

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.568
DRR006520Root Summer glycyrrhizin high producing strain6.543
DRR006521Root Winter glycyrrhizin high producing strain10.658
DRR006522Root Winter glycyrrhizin high producing strain10.303
DRR006523Root Summer glycyrrhizin low producing strain7.918
DRR006524Root Summer glycyrrhizin low producing strain7.672
DRR006525Leaf Summer glycyrrhizin high producing strain7.287
DRR006526Leaf Summer glycyrrhizin high producing strain7.171

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.351
SRR2868004Drought Stress(Tissue:root)11.150
SRR2967015Control (Tissue:root)10.362

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.850
SRR9715740Leave6.341
SRR9715741Leave7.197
SRR9715739Root0.791
SRR9715742Root3.405
SRR9715743Root2.975

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.182
SRR8749028MeJA induced 9h14.535
SRR8749029MeJA induced 9h15.754
SRR8749030Uninduced19.713
SRR8749031Uninduced26.110
SRR8749032Uninduced14.507

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.199
SRR8400027Control-Root14.554

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved