Gene detail information of Glyur000456s00017926.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57850.12.00E-124D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NRKEH40295.10branched-chain-amino-acid aminotransferase-like protein [Medicago truncatula]
COGYP_847315.19.00E-70class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
Swissprottr|Q8L493|DAAA_ARATH1.00E-154D-amino-acid transaminase, chloroplastic {ECO:0000303|PubMed:18318836} (Precursor)
trEMBLtr|A0A072VQ91|A0A072VQ91_MEDTR0Branched-chain-amino-acid aminotransferase-like protein {ECO:0000313|EMBL:KEH40295.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004568976892426-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K18482ADCL EC:4.1.3.38 Folate biosynthesis map00790


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000456s00017926.1PF01063.14Aminotran_4602921.70E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.523
SRR1783600control9.725
SRR1783602moderate drought stress9.677
SRR1811619moderate drought stress9.438

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.398
DRR006520Root Summer glycyrrhizin high producing strain9.513
DRR006521Root Winter glycyrrhizin high producing strain2.732
DRR006522Root Winter glycyrrhizin high producing strain2.850
DRR006523Root Summer glycyrrhizin low producing strain13.384
DRR006524Root Summer glycyrrhizin low producing strain13.428
DRR006525Leaf Summer glycyrrhizin high producing strain3.070
DRR006526Leaf Summer glycyrrhizin high producing strain2.879

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.159
SRR2868004Drought Stress(Tissue:root)24.047
SRR2967015Control (Tissue:root)22.109

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.650
SRR9715740Leave6.882
SRR9715741Leave9.100
SRR9715739Root9.531
SRR9715742Root12.283
SRR9715743Root12.855

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.171
SRR8749028MeJA induced 9h3.029
SRR8749029MeJA induced 9h3.333
SRR8749030Uninduced1.550
SRR8749031Uninduced0.208
SRR8749032Uninduced0.702

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.080
SRR8400027Control-Root17.582

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved