Gene detail information of Glyur000456s00017928.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32730.22.00E-167Homeodomain-like protein
NRXP_004498481.10PREDICTED: myb-related protein 3R-1-like isoform X2 [Cicer arietinum]
Swissprottr|Q9S7G7|MB3R1_ARATH6.00E-152Myb-related protein 3R-1
trEMBLtr|A0A072VFC6|A0A072VFC6_MEDTR0Transcription repressor MYB5 {ECO:0000313|EMBL:KEH40296.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0045699042104515-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000456s00017928.1PF00249.26Myb_DNA-binding25714.80E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.330
SRR1783600control6.336
SRR1783602moderate drought stress4.140
SRR1811619moderate drought stress4.099

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.219
DRR006520Root Summer glycyrrhizin high producing strain6.015
DRR006521Root Winter glycyrrhizin high producing strain2.376
DRR006522Root Winter glycyrrhizin high producing strain2.328
DRR006523Root Summer glycyrrhizin low producing strain3.531
DRR006524Root Summer glycyrrhizin low producing strain3.646
DRR006525Leaf Summer glycyrrhizin high producing strain1.766
DRR006526Leaf Summer glycyrrhizin high producing strain1.688

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.311
SRR2868004Drought Stress(Tissue:root)10.998
SRR2967015Control (Tissue:root)10.382

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.164
SRR9715740Leave1.848
SRR9715741Leave1.262
SRR9715739Root1.289
SRR9715742Root3.937
SRR9715743Root2.755

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.230
SRR8749028MeJA induced 9h10.045
SRR8749029MeJA induced 9h5.847
SRR8749030Uninduced2.459
SRR8749031Uninduced0.952
SRR8749032Uninduced1.212

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.206
SRR8400027Control-Root11.860