Gene detail information of Glyur000461s00027793.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53370.1 | 0 | pectin methylesterase PCR fragment F |
| NR | XP_004502642.1 | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum] |
| COG | YP_006407803.1 | 5.00E-51 | pectin methylesterase [Belliella baltica DSM 15883] |
| Swissprot | tr|Q9FK05|PME61_ARATH | 0 | Pectinesterase 61 |
| trEMBL | tr|G7J6V7|G7J6V7_MEDTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00461 | 44715 | 49352 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000461s00027793.1 | PF04043.10 | PMEI | 70 | 231 | 3.10E-32 |
| Glyur000461s00027793.1 | PF01095.14 | Pectinesterase | 287 | 572 | 3.60E-130 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 262.695 |
| SRR1783600 | control | 263.597 |
| SRR1783602 | moderate drought stress | 332.316 |
| SRR1811619 | moderate drought stress | 329.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 76.346 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.511 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.795 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.356 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 57.850 |
| SRR2868004 | Drought Stress(Tissue:root) | 96.342 |
| SRR2967015 | Control (Tissue:root) | 56.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.069 |
| SRR9715740 | Leave | 3.716 |
| SRR9715741 | Leave | 9.551 |
| SRR9715739 | Root | 292.401 |
| SRR9715742 | Root | 226.095 |
| SRR9715743 | Root | 239.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.575 |
| SRR8749028 | MeJA induced 9h | 5.134 |
| SRR8749029 | MeJA induced 9h | 19.010 |
| SRR8749030 | Uninduced | 2.114 |
| SRR8749031 | Uninduced | 0.119 |
| SRR8749032 | Uninduced | 4.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 230.401 |
| SRR8400027 | Control-Root | 387.573 |