Gene detail information of Glyur000462s00025046.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39660.2 | 3.00E-74 | cycling DOF factor 2 |
| NR | XP_004489399.1 | 0 | PREDICTED: cyclic dof factor 2-like [Cicer arietinum] |
| Swissprot | tr|Q93ZL5|CDF2_ARATH | 3.00E-97 | Cyclic dof factor 2 |
| trEMBL | tr|G7KKV4|G7KKV4_MEDTR | 0 | DOF-type zinc finger DNA-binding family protein {ECO:0000313|EMBL:AES74725.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00462 | 37472 | 40424 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000462s00025046.1 | PF02701.10 | zf-Dof | 149 | 209 | 5.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.317 |
| SRR1783600 | control | 7.851 |
| SRR1783602 | moderate drought stress | 11.758 |
| SRR1811619 | moderate drought stress | 12.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.793 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.569 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.894 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.825 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.543 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.443 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.412 |
| SRR2967015 | Control (Tissue:root) | 8.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.061 |
| SRR9715740 | Leave | 1.845 |
| SRR9715741 | Leave | 1.492 |
| SRR9715739 | Root | 2.181 |
| SRR9715742 | Root | 5.076 |
| SRR9715743 | Root | 2.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.295 |
| SRR8749028 | MeJA induced 9h | 5.084 |
| SRR8749029 | MeJA induced 9h | 1.790 |
| SRR8749030 | Uninduced | 1.536 |
| SRR8749031 | Uninduced | 0.986 |
| SRR8749032 | Uninduced | 1.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.725 |
| SRR8400027 | Control-Root | 10.357 |