Gene detail information of Glyur000462s00025056.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01120.1 | 2.00E-153 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| NR | XP_003618534.1 | 0 | Cystathionine-gamma-synthase [Medicago truncatula] |
| COG | YP_003267806.1 | 1.00E-88 | cystathionine gamma-synthase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|P55217|CGS1_ARATH | 0 | Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor) |
| trEMBL | tr|G7KKY1|G7KKY1_MEDTR | 0 | Cystathionine gamma-synthase {ECO:0000313|EMBL:AES74752.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00462 | 119630 | 135384 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01739 | metB | EC:2.5.1.48 | Biosynthesis of amino acids | map01230 |
| Sulfur metabolism | map00920 | |||
| Cysteine and methionine metabolism | map00270 | |||
| Selenocompound metabolism | map00450 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000462s00025056.2 | PF01053.15 | Cys_Met_Meta_PP | 134 | 325 | 2.50E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.162 |
| SRR1783600 | control | 56.489 |
| SRR1783602 | moderate drought stress | 115.055 |
| SRR1811619 | moderate drought stress | 114.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.265 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.178 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.179 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.027 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.379 |
| SRR2868004 | Drought Stress(Tissue:root) | 76.337 |
| SRR2967015 | Control (Tissue:root) | 98.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.040 |
| SRR9715740 | Leave | 0.023 |
| SRR9715741 | Leave | 0.039 |
| SRR9715739 | Root | 81.540 |
| SRR9715742 | Root | 80.799 |
| SRR9715743 | Root | 79.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 120.834 |
| SRR8400027 | Control-Root | 126.898 |