Gene detail information of Glyur000463s00026773.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08130.10DNA ligase 1
NRKEH29955.10DNA ligase I, ATP-dependent protein [Medicago truncatula]
COGYP_023450.14.00E-97ATP-dependent DNA ligase [Picrophilus torridus DSM 9790]
Swissprottr|Q42572|DNLI1_ARATH0DNA ligase 1 (Precursor)
trEMBLtr|A0A072UVT2|A0A072UVT2_MEDTR0DNA ligase {ECO:0000256|RuleBase:RU000617}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004636795475300-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10747LIG1 EC:6.5.1.1 6.5.1.6 6.5.1.7 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0071897  DNA biosynthetic process


molecular_function

GO:0003677  DNA binding

GO:0003910  DNA ligase (ATP) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000463s00026773.1PF04675.9DNA_ligase_A_N1032805.80E-42
Glyur000463s00026773.1PF01068.16DNA_ligase_A_M3465504.20E-53
Glyur000463s00026773.1PF04679.10DNA_ligase_A_C5756861.80E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.412
SRR1783600control7.361
SRR1783602moderate drought stress14.200
SRR1811619moderate drought stress13.876

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.108
DRR006520Root Summer glycyrrhizin high producing strain6.972
DRR006521Root Winter glycyrrhizin high producing strain9.006
DRR006522Root Winter glycyrrhizin high producing strain8.656
DRR006523Root Summer glycyrrhizin low producing strain4.113
DRR006524Root Summer glycyrrhizin low producing strain4.202
DRR006525Leaf Summer glycyrrhizin high producing strain5.775
DRR006526Leaf Summer glycyrrhizin high producing strain5.619

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.548
SRR2868004Drought Stress(Tissue:root)30.863
SRR2967015Control (Tissue:root)40.144

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.727
SRR9715740Leave6.275
SRR9715741Leave20.809
SRR9715739Root0.537
SRR9715742Root5.172
SRR9715743Root4.231

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.917
SRR8749028MeJA induced 9h43.288
SRR8749029MeJA induced 9h22.211
SRR8749030Uninduced60.678
SRR8749031Uninduced37.286
SRR8749032Uninduced31.616

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.728
SRR8400027Control-Root23.452

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved