Gene detail information of Glyur000463s00026774.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19920.1 | 2.00E-179 | Pseudouridine synthase/archaeosine transglycosylase-like family protein |
| NR | KHN02652.1 | 0 | ATP sulfurylase 2 [Glycine soja] |
| COG | YP_074972.1 | 2.00E-38 | sulfate adenylyltransferase [Symbiobacterium thermophilum IAM 14863] |
| Swissprot | tr|Q43870|APS2_ARATH | 0 | ATP sulfurylase 2 (Precursor) |
| trEMBL | tr|I1LWX5|I1LWX5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G06940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00463 | 81158 | 85493 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13811 | PAPSS | EC:2.7.7.4 2.7.1.25 | Sulfur metabolism | map00920 |
| Purine metabolism | map00230 | |||
| Selenocompound metabolism | map00450 | |||
| Monobactam biosynthesis | map00261 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000463s00026774.1 | PF14306.1 | PUA_2 | 72 | 233 | 5.60E-40 |
| Glyur000463s00026774.1 | PF01747.12 | ATP-sulfurylase | 242 | 303 | 7.50E-14 |
| Glyur000463s00026774.1 | PF01747.12 | ATP-sulfurylase | 307 | 420 | 1.70E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.966 |
| SRR1783600 | control | 8.081 |
| SRR1783602 | moderate drought stress | 3.647 |
| SRR1811619 | moderate drought stress | 3.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.012 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.904 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.460 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.613 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.540 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.152 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.784 |
| SRR2967015 | Control (Tissue:root) | 6.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.999 |
| SRR9715740 | Leave | 61.205 |
| SRR9715741 | Leave | 30.160 |
| SRR9715739 | Root | 8.518 |
| SRR9715742 | Root | 12.450 |
| SRR9715743 | Root | 11.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.843 |
| SRR8749028 | MeJA induced 9h | 0.569 |
| SRR8749029 | MeJA induced 9h | 0.872 |
| SRR8749030 | Uninduced | 0.875 |
| SRR8749031 | Uninduced | 0.773 |
| SRR8749032 | Uninduced | 1.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.235 |
| SRR8400027 | Control-Root | 17.609 |